Except if you've switched to using your MacBook in clamshell mode (i.e.: using an external display, with the lid closed) - in which case, the apps will prompt for the decryption passcode (which, optimally, would be different for each doc) -- even though, in the days before Touch ID, it would store a token accessible via KeyChain.
So, to make the switch back, to using KeyChain instead of Touch ID:
Delete all fingerprints from the Touch ID preference pane, in System Preferences. (Which, since you've switched to clamshell mode, you're rarely using anyway - if ever.)
In retrospect, kinda obvious - though this annoyance has been on my To Do list for awhile. Hopefully this tip saves someone else some trouble.